HL_7ZPQ_062

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7ZPQ|1|5|U|879, 7ZPQ|1|5|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_062 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0673

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7ZPQ|1|5|A|876
7ZPQ|1|5|C|877
7ZPQ|1|5|G|878
7ZPQ|1|5|U|879
7ZPQ|1|5|G|880
7ZPQ|1|5|C|881
7ZPQ|1|5|A|882
7ZPQ|1|5|A|883
7ZPQ|1|5|A|884
7ZPQ|1|5|U|885

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BO

60S ribosomal protein L17-A

Chain Bi

60S ribosomal protein L37-A