HL_7ZPQ_069

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7ZPQ|1|5|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_069 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.3494

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7ZPQ|1|5|C|1239
7ZPQ|1|5|A|1240
7ZPQ|1|5|U|1241
7ZPQ|1|5|G|1242
7ZPQ|1|5|G|1243
7ZPQ|1|5|A|1244
7ZPQ|1|5|A|1245
7ZPQ|1|5|G|1246
7ZPQ|1|5|U|1247
7ZPQ|1|5|C|1248
7ZPQ|1|5|G|1249

Current chains

Chain 5

25S ribosomal RNA

Nearby chains