HL_7ZPQ_070

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

7ZPQ|1|5|C|1272

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_070 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.457

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7ZPQ|1|5|U|1267
7ZPQ|1|5|G|1268
7ZPQ|1|5|U|1269
7ZPQ|1|5|A|1270
7ZPQ|1|5|A|1271
7ZPQ|1|5|C|1272
7ZPQ|1|5|A|1273
7ZPQ|1|5|A|1274

Current chains

Chain 5

25S ribosomal RNA

Nearby chains