HL_7ZQ6_001

3D structure

PDB id

7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

7ZQ6|1|M|U|16, 7ZQ6|1|M|U|17, 7ZQ6|1|M|G|18, 7ZQ6|1|M|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZQ6_001 not in the Motif Atlas

Geometric match to HL_1N78_001

Geometric discrepancy: 0.3628

The information below is about HL_1N78_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7ZQ6|1|M|C|13
7ZQ6|1|M|A|14
7ZQ6|1|M|G|15
7ZQ6|1|M|U|16
7ZQ6|1|M|U|17
7ZQ6|1|M|G|18
7ZQ6|1|M|G|19
7ZQ6|1|M|U|20
7ZQ6|1|M|A|21
7ZQ6|1|M|G|22

Current chains

Chain M

Gly-tRNA

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA

Chain f

50S ribosomal protein L5