HL_8A5I_013

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

ACACGUGAAAU

Length

11 nucleotides

Bulged bases

8A5I|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A5I_013 not in the Motif Atlas

Geometric match to HL_5J7L_145

Geometric discrepancy: 0.0906

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8A5I|1|A|A|428
8A5I|1|A|C|429
8A5I|1|A|A|430
8A5I|1|A|C|431
8A5I|1|A|G|432
8A5I|1|A|U|433
8A5I|1|A|G|434
8A5I|1|A|A|435
8A5I|1|A|A|436
8A5I|1|A|A|437
8A5I|1|A|U|438

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28