HL_8B2L_014

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUCCG

Length

5 nucleotides

Bulged bases

8B2L|1|A3|U|589, 8B2L|1|A3|C|591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_014 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.1384

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8B2L|1|A3|C|588
8B2L|1|A3|U|589
8B2L|1|A3|C|590
8B2L|1|A3|C|591
8B2L|1|A3|G|592

Current chains

Chain A3

25S rRNA

Nearby chains

Chain b3

eL6 (60S ribosomal protein L6)