HL_8B2L_023

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8B2L|1|A3|A|923

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_023 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1006

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8B2L|1|A3|G|920
8B2L|1|A3|C|921
8B2L|1|A3|G|922
8B2L|1|A3|A|923
8B2L|1|A3|A|924
8B2L|1|A3|A|925
8B2L|1|A3|G|926
8B2L|1|A3|A|927
8B2L|1|A3|C|928

Current chains

Chain A3

25S rRNA

Nearby chains

Chain F3

Ribosomal protein L15

Chain V3

Ribosomal protein L37

Chain o3

uL2 (60S ribosomal protein L8)