HL_8B2L_026

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUUGUUG

Length

8 nucleotides

Bulged bases

8B2L|1|A3|U|1093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_026 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.123

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8B2L|1|A3|C|1088
8B2L|1|A3|U|1089
8B2L|1|A3|U|1090
8B2L|1|A3|U|1091
8B2L|1|A3|G|1092
8B2L|1|A3|U|1093
8B2L|1|A3|U|1094
8B2L|1|A3|G|1095

Current chains

Chain A3

25S rRNA

Nearby chains

Chain J3

60S ribosomal protein L21-1-like

Chain O3

60S ribosomal protein L29

Chain h3

60S ribosomal protein L5-like