HL_8B2L_050

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

U(OMC)UAAUUAG

Length

9 nucleotides

Bulged bases

8B2L|1|A3|U|2301

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_050 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0738

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8B2L|1|A3|U|2295
8B2L|1|A3|OMC|2296
8B2L|1|A3|U|2297
8B2L|1|A3|A|2298
8B2L|1|A3|A|2299
8B2L|1|A3|U|2300
8B2L|1|A3|U|2301
8B2L|1|A3|A|2302
8B2L|1|A3|G|2303

Current chains

Chain A3

25S rRNA

Nearby chains

Chain e3

60S ribosomal protein L23

Chain h1

Small subunit ribosomal RNA; SSU rRNA