HL_8B2L_061

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8B2L|1|A3|U|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_061 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1614

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8B2L|1|A3|C|2843
8B2L|1|A3|G|2844
8B2L|1|A3|U|2845
8B2L|1|A3|U|2846
8B2L|1|A3|C|2847
8B2L|1|A3|A|2848
8B2L|1|A3|U|2849
8B2L|1|A3|A|2850
8B2L|1|A3|G|2851

Current chains

Chain A3

25S rRNA

Nearby chains

Chain Y3

ubiquitin-60S ribosomal protein L40

Chain g3

uL16 (60S ribosomal protein L10)