HL_8B2L_086
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAUAG(PSU)GGC
- Length
- 9 nucleotides
- Bulged bases
- 8B2L|1|h1|G|341
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_086 not in the Motif Atlas
- Homologous match to HL_4V88_193
- Geometric discrepancy: 0.2871
- The information below is about HL_4V88_193
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_82182.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
8B2L|1|h1|G|334
8B2L|1|h1|A|335
8B2L|1|h1|U|336
8B2L|1|h1|A|337
8B2L|1|h1|G|338
8B2L|1|h1|PSU|339
8B2L|1|h1|G|340
8B2L|1|h1|G|341
8B2L|1|h1|C|342
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain P1
- 40S ribosomal protein S8
- Chain X1
- 40S ribosomal protein S11-like
Coloring options: