HL_8B2L_103

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

ACUGAGAGCU

Length

10 nucleotides

Bulged bases

8B2L|1|h1|G|1246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_103 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2405

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8B2L|1|h1|A|1241
8B2L|1|h1|C|1242
8B2L|1|h1|U|1243
8B2L|1|h1|G|1244
8B2L|1|h1|A|1245
8B2L|1|h1|G|1246
8B2L|1|h1|A|1247
8B2L|1|h1|G|1248
8B2L|1|h1|C|1249
8B2L|1|h1|U|1250

Current chains

Chain h1

18S rRNA

Nearby chains

Chain N1

ubiquitin-40S ribosomal protein S27a-like

Chain V1

40S ribosomal protein S29

Chain Y1

40S ribosomal protein S15-like