HL_8B2L_105

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8B2L|1|h1|U|1317

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_105 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.0911

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8B2L|1|h1|G|1312
8B2L|1|h1|U|1313
8B2L|1|h1|U|1314
8B2L|1|h1|A|1315
8B2L|1|h1|A|1316
8B2L|1|h1|U|1317
8B2L|1|h1|U|1318
8B2L|1|h1|C|1319

Current chains

Chain h1

18S rRNA

Nearby chains

Chain D1

40S ribosomal protein S17-like