HL_8B2L_117
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- (A2M)CGUGCAAA(PSU)
- Length
- 10 nucleotides
- Bulged bases
- 8B2L|1|A3|U|889, 8B2L|1|A3|A|893, 8B2L|1|A3|A|894
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_117 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.2352
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8B2L|1|A3|A2M|886
8B2L|1|A3|C|887
8B2L|1|A3|G|888
8B2L|1|A3|U|889
8B2L|1|A3|G|890
8B2L|1|A3|C|891
8B2L|1|A3|A|892
8B2L|1|A3|A|893
8B2L|1|A3|A|894
8B2L|1|A3|PSU|895
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain V3
- Ribosomal protein L37
- Chain j3
- 50S ribosomal protein L22, chloroplastic
- Chain l3
- nascent chain
- Chain r3
- uL3 (60S ribosomal protein L3)
Coloring options: