HL_8B2L_118

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CG(OMC)AUCA(OMG)

Length

8 nucleotides

Bulged bases

8B2L|1|A3|OMC|1852, 8B2L|1|A3|U|1854, 8B2L|1|A3|A|1856

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_118 not in the Motif Atlas

Geometric match to HL_5TBW_041

Geometric discrepancy: 0.0698

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8B2L|1|A3|C|1850
8B2L|1|A3|G|1851
8B2L|1|A3|OMC|1852
8B2L|1|A3|A|1853
8B2L|1|A3|U|1854
8B2L|1|A3|C|1855
8B2L|1|A3|A|1856
8B2L|1|A3|OMG|1857

Current chains

Chain A3

25S rRNA

Nearby chains

Chain V3

Ribosomal protein L37

Chain X3

60S ribosomal protein L39-3

Chain j3

50S ribosomal protein L22, chloroplastic

Chain l3

nascent chain

Chain s3

uL4 (60S ribosomal protein L4)