HL_8B2L_119
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- (PSU)UUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8B2L|1|A3|A|2142, 8B2L|1|A3|A|2143, 8B2L|1|A3|U|2144, 8B2L|1|A3|A|2148
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_119 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.2233
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8B2L|1|A3|PSU|2139
8B2L|1|A3|U|2140
8B2L|1|A3|U|2141
8B2L|1|A3|A|2142
8B2L|1|A3|A|2143
8B2L|1|A3|U|2144
8B2L|1|A3|U|2145
8B2L|1|A3|A|2146
8B2L|1|A3|A|2147
8B2L|1|A3|A|2148
8B2L|1|A3|A|2149
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain V3
- Ribosomal protein L37
- Chain l3
- nascent chain
- Chain o3
- uL2 (60S ribosomal protein L8)
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