HL_8B2L_125

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(OMG)AUGAUUC

Length

8 nucleotides

Bulged bases

8B2L|1|h1|U|252

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_125 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.2399

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8B2L|1|h1|OMG|246
8B2L|1|h1|A|247
8B2L|1|h1|U|248
8B2L|1|h1|G|249
8B2L|1|h1|A|250
8B2L|1|h1|U|251
8B2L|1|h1|U|252
8B2L|1|h1|C|253

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain X1

40S ribosomal protein S11-like