HL_8B5L_024

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8B5L|1|5|A|1585, 8B5L|1|5|G|1588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_024 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.0954

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8B5L|1|5|G|1582
8B5L|1|5|C|1583
8B5L|1|5|G|1584
8B5L|1|5|A|1585
8B5L|1|5|A|1586
8B5L|1|5|A|1587
8B5L|1|5|G|1588
8B5L|1|5|A|1589
8B5L|1|5|C|1590

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37