HL_8B5L_045
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 8B5L|1|5|C|2637, 8B5L|1|5|G|2639, 8B5L|1|5|A|2641
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B5L_045 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.0806
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8B5L|1|5|C|2635
8B5L|1|5|G|2636
8B5L|1|5|C|2637
8B5L|1|5|A|2638
8B5L|1|5|G|2639
8B5L|1|5|C|2640
8B5L|1|5|A|2641
8B5L|1|5|G|2642
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L17
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39-like
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