HL_8B5L_050
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8B5L|1|5|A|3374, 8B5L|1|5|A|3375, 8B5L|1|5|U|3376, 8B5L|1|5|A|3380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B5L_050 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.1574
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8B5L|1|5|U|3371
8B5L|1|5|U|3372
8B5L|1|5|U|3373
8B5L|1|5|A|3374
8B5L|1|5|A|3375
8B5L|1|5|U|3376
8B5L|1|5|U|3377
8B5L|1|5|A|3378
8B5L|1|5|A|3379
8B5L|1|5|A|3380
8B5L|1|5|A|3381
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain j
- Ribosomal protein L37
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