HL_8B5L_058

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8B5L|1|5|A|3960, 8B5L|1|5|C|3967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_058 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1331

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8B5L|1|5|U|3956
8B5L|1|5|C|3957
8B5L|1|5|A|3958
8B5L|1|5|A|3959
8B5L|1|5|A|3960
8B5L|1|5|C|3961
8B5L|1|5|G|3962
8B5L|1|5|G|3963
8B5L|1|5|U|3964
8B5L|1|5|A|3965
8B5L|1|5|A|3966
8B5L|1|5|C|3967
8B5L|1|5|G|3968

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

Ribosomal protein L10

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29