HL_8B5L_064

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_064 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1413

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8B5L|1|5|C|4163
8B5L|1|5|G|4164
8B5L|1|5|U|4165
8B5L|1|5|U|4166
8B5L|1|5|C|4167
8B5L|1|5|A|4168
8B5L|1|5|U|4169
8B5L|1|5|A|4170
8B5L|1|5|G|4171

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

Ribosomal protein L10

Chain m

Ubiquitin-60S ribosomal protein L40