HL_8B5L_079

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

8B5L|1|8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_079 not in the Motif Atlas

Geometric match to HL_2D6F_005

Geometric discrepancy: 0.3435

The information below is about HL_2D6F_005

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_91620.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8B5L|1|8|G|121
8B5L|1|8|G|122
8B5L|1|8|U|123
8B5L|1|8|U|124
8B5L|1|8|C|125
8B5L|1|8|C|126
8B5L|1|8|U|127
8B5L|1|8|C|128
8B5L|1|8|C|129

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

Ribosomal_L23eN domain-containing protein