HL_8BH6_025

3D structure

PDB id

8BH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 30S ribosomal subunit from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8BH6|1|a|G|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH6_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1369

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

8BH6|1|a|G|1101
8BH6|1|a|U|1102
8BH6|1|a|U|1103
8BH6|1|a|A|1104
8BH6|1|a|A|1105
8BH6|1|a|G|1106
8BH6|1|a|U|1107
8BH6|1|a|C|1108

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2