HL_8BHF_022
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_022 not in the Motif Atlas
- Geometric match to HL_1ZCI_002
- Geometric discrepancy: 0.3562
- The information below is about HL_1ZCI_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_94376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8BHF|1|A2|C|1436
8BHF|1|A2|C|1437
8BHF|1|A2|U|1438
8BHF|1|A2|U|1440
8BHF|1|A2|C|1441
8BHF|1|A2|C|1442
8BHF|1|A2|A|1443
8BHF|1|A2|G|1444
8BHF|1|A2|U|1445
8BHF|1|A2|C|1446
8BHF|1|A2|C|1447
8BHF|1|A2|G|1448
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain D1
- Ribosomal protein L18
- Chain O1
- 60S ribosomal protein L29
- Chain l3
- 60S ribosomal protein L4
- Chain o3
- 60S ribosomal protein L7
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