HL_8BHF_025

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

8BHF|1|A2|U|1596, 8BHF|1|A2|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_025 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0757

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8BHF|1|A2|A|1593
8BHF|1|A2|C|1594
8BHF|1|A2|G|1595
8BHF|1|A2|U|1596
8BHF|1|A2|G|1597
8BHF|1|A2|C|1598
8BHF|1|A2|G|1599
8BHF|1|A2|A|1600
8BHF|1|A2|A|1601
8BHF|1|A2|U|1602

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

60S ribosomal protein L17

Chain W1

Ribosomal protein L37

Chain k3

Ribosomal protein L3