HL_8BHF_026

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8BHF|1|A2|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_026 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1004

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BHF|1|A2|G|1627
8BHF|1|A2|C|1628
8BHF|1|A2|G|1629
8BHF|1|A2|A|1630
8BHF|1|A2|A|1631
8BHF|1|A2|A|1632
8BHF|1|A2|G|1633
8BHF|1|A2|A|1634
8BHF|1|A2|C|1635

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Ribosomal protein L15

Chain W1

Ribosomal protein L37

Chain j3

60S ribosomal protein L8