HL_8BHF_029

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

8BHF|1|A2|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_029 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.5981

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8BHF|1|A2|C|1816
8BHF|1|A2|U|1817
8BHF|1|A2|G|1818
8BHF|1|A2|G|1819
8BHF|1|A2|U|1820
8BHF|1|A2|G|1821
8BHF|1|A2|U|1822
8BHF|1|A2|G|1823

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain G1

60S ribosomal protein L21

Chain O1

60S ribosomal protein L29

Chain m3

60S ribosomal protein L5