HL_8BHF_033

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_033 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.3706

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8BHF|1|A2|U|2006
8BHF|1|A2|G|2007
8BHF|1|A2|U|2008
8BHF|1|A2|A|2009
8BHF|1|A2|A|2010
8BHF|1|A2|C|2011
8BHF|1|A2|A|2012
8BHF|1|A2|A|2013

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain f1

60S ribosomal protein L12