HL_8BHF_047

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

8BHF|1|A2|C|2797, 8BHF|1|A2|G|2799, 8BHF|1|A2|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_047 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.0742

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8BHF|1|A2|C|2795
8BHF|1|A2|G|2796
8BHF|1|A2|C|2797
8BHF|1|A2|A|2798
8BHF|1|A2|G|2799
8BHF|1|A2|C|2800
8BHF|1|A2|A|2801
8BHF|1|A2|G|2802

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

60S ribosomal protein L17

Chain W1

Ribosomal protein L37

Chain Y1

60S ribosomal protein L39-like

Chain l3

60S ribosomal protein L4