HL_8BHF_052
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8BHF|1|A2|A|3637, 8BHF|1|A2|A|3638, 8BHF|1|A2|U|3639, 8BHF|1|A2|A|3643
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_052 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.142
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8BHF|1|A2|U|3634
8BHF|1|A2|U|3635
8BHF|1|A2|U|3636
8BHF|1|A2|A|3637
8BHF|1|A2|A|3638
8BHF|1|A2|U|3639
8BHF|1|A2|U|3640
8BHF|1|A2|A|3641
8BHF|1|A2|A|3642
8BHF|1|A2|A|3643
8BHF|1|A2|A|3644
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain 11
- nascent chain
- Chain W1
- Ribosomal protein L37
- Chain j3
- 60S ribosomal protein L8
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