HL_8BHF_055

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8BHF|1|A2|A|3755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_055 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1087

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BHF|1|A2|G|3752
8BHF|1|A2|U|3753
8BHF|1|A2|A|3754
8BHF|1|A2|A|3755
8BHF|1|A2|C|3756
8BHF|1|A2|U|3757
8BHF|1|A2|A|3758
8BHF|1|A2|U|3759
8BHF|1|A2|G|3760
8BHF|1|A2|A|3761
8BHF|1|A2|C|3762

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain 21

Transfer RNA; tRNA

Chain A3

Small subunit ribosomal RNA; SSU rRNA