HL_8BHF_061

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8BHF|1|A2|A|4200, 8BHF|1|A2|C|4207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_061 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.135

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8BHF|1|A2|U|4196
8BHF|1|A2|C|4197
8BHF|1|A2|A|4198
8BHF|1|A2|A|4199
8BHF|1|A2|A|4200
8BHF|1|A2|C|4201
8BHF|1|A2|G|4202
8BHF|1|A2|G|4203
8BHF|1|A2|U|4204
8BHF|1|A2|A|4205
8BHF|1|A2|A|4206
8BHF|1|A2|C|4207
8BHF|1|A2|G|4208

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain G1

60S ribosomal protein L21

Chain O1

60S ribosomal protein L29

Chain r3

Ribosomal protein L10