HL_8BHF_068

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8BHF|1|A2|G|4461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_068 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.0755

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8BHF|1|A2|A|4460
8BHF|1|A2|G|4461
8BHF|1|A2|C|4462
8BHF|1|A2|A|4463
8BHF|1|A2|G|4464
8BHF|1|A2|A|4465
8BHF|1|A2|A|4466
8BHF|1|A2|U|4467

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Z1

Ubiquitin-60S ribosomal protein L40

Chain q3

60S ribosomal protein L9