HL_8BHF_103

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8BHF|1|A3|U|1300, 8BHF|1|A3|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_103 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2757

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8BHF|1|A3|A|1295
8BHF|1|A3|U|1296
8BHF|1|A3|U|1297
8BHF|1|A3|G|1298
8BHF|1|A3|A|1299
8BHF|1|A3|U|1300
8BHF|1|A3|A|1301
8BHF|1|A3|G|1302
8BHF|1|A3|C|1303
8BHF|1|A3|U|1304

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain Q3

40S ribosomal protein S15

Chain e3

40S ribosomal protein S29

Chain g3

Ubiquitin-40S ribosomal protein S27a