HL_8BHF_105

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8BHF|1|A3|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_105 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1228

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8BHF|1|A3|G|1366
8BHF|1|A3|U|1367
8BHF|1|A3|U|1368
8BHF|1|A3|A|1369
8BHF|1|A3|A|1370
8BHF|1|A3|U|1371
8BHF|1|A3|U|1372
8BHF|1|A3|C|1373

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain S3

40S ribosomal protein S17