HL_8BQD_020

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_020 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.412

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8BQD|1|2|A|829
8BQD|1|2|U|830
8BQD|1|2|U|831
8BQD|1|2|U|832
8BQD|1|2|U|833
8BQD|1|2|G|834
8BQD|1|2|U|835
8BQD|1|2|U|836
8BQD|1|2|G|837
8BQD|1|2|G|838
8BQD|1|2|U|839
8BQD|1|2|U|840
8BQD|1|2|U|841
8BQD|1|2|C|842
8BQD|1|2|U|843

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S11-A