HL_8BQD_028

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8BQD|1|2|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_028 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2923

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8BQD|1|2|A|1238
8BQD|1|2|U|1239
8BQD|1|2|U|1240
8BQD|1|2|G|1241
8BQD|1|2|A|1242
8BQD|1|2|G|1243
8BQD|1|2|A|1244
8BQD|1|2|G|1245
8BQD|1|2|C|1246
8BQD|1|2|U|1247

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain M

RPS29A isoform 1

Chain N

40S ribosomal protein S31