HL_8BQD_031

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_031 not in the Motif Atlas

Homologous match to HL_4V88_216

Geometric discrepancy: 0.4676

The information below is about HL_4V88_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36540.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BQD|1|2|C|1359
8BQD|1|2|A|1360
8BQD|1|2|U|1361
8BQD|1|2|U|1362
8BQD|1|2|U|1363
8BQD|1|2|G|1364

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

Rps5p

Chain F

40S ribosomal protein S16-A

Chain I

40S ribosomal protein S19-A