HL_8BQD_057

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8BQD|1|BQ|U|879, 8BQD|1|BQ|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_057 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0863

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8BQD|1|BQ|A|876
8BQD|1|BQ|C|877
8BQD|1|BQ|G|878
8BQD|1|BQ|U|879
8BQD|1|BQ|G|880
8BQD|1|BQ|C|881
8BQD|1|BQ|A|882
8BQD|1|BQ|A|883
8BQD|1|BQ|A|884
8BQD|1|BQ|U|885

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3