HL_8BQD_064

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8BQD|1|BQ|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_064 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.4506

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8BQD|1|BQ|C|1239
8BQD|1|BQ|A|1240
8BQD|1|BQ|U|1241
8BQD|1|BQ|G|1242
8BQD|1|BQ|G|1243
8BQD|1|BQ|A|1244
8BQD|1|BQ|A|1245
8BQD|1|BQ|G|1246
8BQD|1|BQ|U|1247
8BQD|1|BQ|C|1248
8BQD|1|BQ|G|1249

Current chains

Chain BQ

25S rRNA

Nearby chains