HL_8BQX_020

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_020 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.412

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8BQX|1|2|A|829
8BQX|1|2|U|830
8BQX|1|2|U|831
8BQX|1|2|U|832
8BQX|1|2|U|833
8BQX|1|2|G|834
8BQX|1|2|U|835
8BQX|1|2|U|836
8BQX|1|2|G|837
8BQX|1|2|G|838
8BQX|1|2|U|839
8BQX|1|2|U|840
8BQX|1|2|U|841
8BQX|1|2|C|842
8BQX|1|2|U|843

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S11-A