HL_8BQX_027

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

8BQX|1|2|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_027 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1383

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8BQX|1|2|G|1188
8BQX|1|2|A|1189
8BQX|1|2|C|1190
8BQX|1|2|U|1191
8BQX|1|2|C|1192
8BQX|1|2|A|1193
8BQX|1|2|A|1194
8BQX|1|2|C|1195
8BQX|1|2|A|1196
8BQX|1|2|C|1197

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S16-A

Chain J

40S ribosomal protein S20

Chain M

40S ribosomal protein S29-A