HL_8BQX_028

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8BQX|1|2|G|1243

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_028 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2923

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8BQX|1|2|A|1238
8BQX|1|2|U|1239
8BQX|1|2|U|1240
8BQX|1|2|G|1241
8BQX|1|2|A|1242
8BQX|1|2|G|1243
8BQX|1|2|A|1244
8BQX|1|2|G|1245
8BQX|1|2|C|1246
8BQX|1|2|U|1247

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain M

40S ribosomal protein S29-A

Chain N

40S ribosomal protein S31