HL_8BQX_083

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

8BQX|1|BQ|A|2138, 8BQX|1|BQ|A|2139, 8BQX|1|BQ|U|2140, 8BQX|1|BQ|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_083 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.0838

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8BQX|1|BQ|U|2135
8BQX|1|BQ|C|2136
8BQX|1|BQ|U|2137
8BQX|1|BQ|A|2138
8BQX|1|BQ|A|2139
8BQX|1|BQ|U|2140
8BQX|1|BQ|U|2141
8BQX|1|BQ|A|2142
8BQX|1|BQ|A|2143
8BQX|1|BQ|A|2144
8BQX|1|BQ|A|2145

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AW

60S ribosomal protein L2-A