HL_8BQX_093
3D structure
- PDB id
- 8BQX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8BQX|1|BQ|A|2637, 8BQX|1|BQ|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BQX_093 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.0706
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
8BQX|1|BQ|U|2633
8BQX|1|BQ|U|2634
8BQX|1|BQ|A|2635
8BQX|1|BQ|A|2636
8BQX|1|BQ|A|2637
8BQX|1|BQ|C|2638
8BQX|1|BQ|G|2639
8BQX|1|BQ|A|2640
8BQX|1|BQ|U|2641
8BQX|1|BQ|A|2642
8BQX|1|BQ|A|2643
8BQX|1|BQ|C|2644
8BQX|1|BQ|G|2645
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AV
- 60S ribosomal protein L29
- Chain BD
- RPL10 isoform 1
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
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