HL_8BR8_024

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

ACGCGCAGAU

Length

10 nucleotides

Bulged bases

8BR8|1|Lt|C|596, 8BR8|1|Lt|G|600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_024 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.1277

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8BR8|1|Lt|A|593
8BR8|1|Lt|C|594
8BR8|1|Lt|G|595
8BR8|1|Lt|C|596
8BR8|1|Lt|G|597
8BR8|1|Lt|C|598
8BR8|1|Lt|A|599
8BR8|1|Lt|G|600
8BR8|1|Lt|A|601
8BR8|1|Lt|U|602

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LQ

Ribosomal protein L17

Chain Lk

Ribosomal protein L37