HL_8BR8_025

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8BR8|1|Lt|A|630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_025 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1615

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BR8|1|Lt|G|627
8BR8|1|Lt|C|628
8BR8|1|Lt|G|629
8BR8|1|Lt|A|630
8BR8|1|Lt|A|631
8BR8|1|Lt|A|632
8BR8|1|Lt|G|633
8BR8|1|Lt|A|634
8BR8|1|Lt|C|635

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LO

Ribosomal protein L15

Chain Lk

Ribosomal protein L37