HL_8BR8_041

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCUUGCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_041 not in the Motif Atlas

Geometric match to HL_1OOA_001

Geometric discrepancy: 0.324

The information below is about HL_1OOA_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8BR8|1|Lt|C|1384
8BR8|1|Lt|C|1385
8BR8|1|Lt|U|1386
8BR8|1|Lt|U|1387
8BR8|1|Lt|G|1388
8BR8|1|Lt|C|1389
8BR8|1|Lt|G|1390

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain Lq

Ribosomal protein L37a