HL_8BR8_043

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

8BR8|1|Lt|C|1478, 8BR8|1|Lt|G|1480, 8BR8|1|Lt|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_043 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.1577

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8BR8|1|Lt|C|1476
8BR8|1|Lt|G|1477
8BR8|1|Lt|C|1478
8BR8|1|Lt|A|1479
8BR8|1|Lt|G|1480
8BR8|1|Lt|C|1481
8BR8|1|Lt|A|1482
8BR8|1|Lt|G|1483

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LG

Ribosomal protein L39

Chain LQ

Ribosomal protein L17

Chain Lk

Ribosomal protein L37